Publications

Publications:

  • Salojärvi, J.,  Rambani, A.,Yu, Z., Guyot, R., Strickler, S., Lepelley,  M., Wang, C., Rajaraman, S., Rastas, P.,  Zheng, C., Santos Muñoz, D., Meidanis, J., Rossi Paschoal, A., Bawin, Y., Krabbenhoft, T., Wang, Z.Q., Fleck, S., Aussel, R., Bellanger, L., Charpagne, A., Fournier, C.,  Kassam, M., Lefebvre, G., D.,  Métairon, C., Moine, Rigoreau, M., Stolte, Hamon, P., J., Couturon, E.,  Tranchant-Dubreuil, C., Mukherjee, M., Lan, T., Engelhardt, J., Stadler, P., Mireza, S.,  De Lemos, C., Ivamoto Suzuki, S., Sumirat, U., Wai, C.M., Dauchot, N., Orozco-Arias, S., Garavito, Kiwuka, C., Musoli, P., Nalukenge, A.,    Guichoux., E., Reinout, H., Martin, S., Carreto-Paulet, L., Guerreiro Filho, S., Braghini, M.T., Padiha, L., Sera, G.H., Ruttink, T., Henry, R., A., Marraccini, Van de Peer, Y., P., Andrade, A., Domingues, Giullano, G., Mueller, Pereira, L.F., Plaisance, S., Pocet, V., Rombouts, S., Sankoff, D.,  Albert, V.*, Crouzillat, D.,* de Kochko., A,* Descombes, P.*. The Genome and Population Genomics of Allopolyploid Coffea arabica Reveal the Diversification History of Modern Coffee Cultivars. Nature Genetics, 2024; 56: 721-731 DOI 0.1038/s41588-024-01695-w (Link)
  • Raghavan, I. , Rosheena Juman, Wang, Z.Q.*. The Non-Mevalonate Pathway Requires a Delicate Balance of Intermediates to Maximize Terpene Production. Applied Microbiology and Biotechnology, 2024; 108:245 DOI 10.1007/s00253-024-13077-7 (Link)
  • Carroll, E., Ravi, B.G., Raghavan, I, Mukherjee, M., Wang, Z.Q.* A Cytochrome P450 CYP87A4 Imparts Sterol Side-chain Cleavage in Digoxin Biosynthesis. Nature Communications, 2023; 14: 4042 DOI 10.1038/s41467-023-39719-4 (Link)
  • Mukherjee, M., Blair, R.H., Wang, Z.Q.*. Machine-Learning Guided Elucidation of Contribution of Individual Steps in the Mevalonate Pathway and Construction of a Yeast Platform Strain for Terpenoid Production. Metabolic Engineering, 2022; DOI 10.1016/j.ymben.2022.10.004 (Link)
  • Raghavan, I., Ravi, B.G., Carroll, E.,Wang, Z.Q.*.Cardenolide Increase in Foxglove After 2,1,3-Benzothiadiazol Treatment Reveals a Potential Link Between Cardenolide and Phytosterol Biosynthesis. Plant and Cell Physiology, 2022; DOI 10.1093/pcp/pcac144 (Link)
  • Mukherjee, M., Wang, Z.Q.*. A Well-Characterized Polycistronic-Like Gene Expression System in Yeast. Biotechnology and Bioengineering, 2022; DOI 10.1002/bit.28247 (Link)
  • Wang, Z.Q.*, Song, H., Koleski, E.J., Hara, N., Park, D.S., Kumar, G., Min, Y.J., Dauenhauer, P.J., Chang, M.C.Y.*. A Dual Cellular-Heterogeneous Catalyst Strategy for the Production of Olefins from Glucose. Nature Chemistry, 2021; 13: 1178-1185; DOI 10.1038/s41557-021-00820-0 (Link) (UB News) (Nat Chem News & Views)
  • Raghavan, I., Ravi, B.G., Carroll, E.,Wang, Z.Q.*. Cardenolide increase in foxglove during stresses corresponds to cholesterol and phytosterol biosynthesis. bioRxiv, 2021 (Link)
  • Crespi, E.*, Burnap, R., Chen J., Das, M., Gassman N., Rosa, E., Simmons R., Wada H., Wang Z.Q., Xiao J., Yang B., Yin, J., Goldstone, J.V.*, Resolving the Rules of Robustness and Resilience in Biology Across Scales. Integrative and Comparative Biology 2021; 61(6): 2163-2179; DOI 10.1093/icb/icab183 (Link)
  • Swayambhu, G., Raghavan, R., Ravi, B.G., Pfeifer, B.A.*, Wang, Z.Q.*. Salicylate Glucoside as a Nontoxic Plant Protectant Alternative to Salicylic Acid. ACS Agriculture Science & Technology, 2021; 1(5): 515-521; DOI 10.1021/acsagscitech.1c00131 (Link)
  • Mukherjee, M., Caroll, E., Wang, Z.Q.*, Rapid Assembly of Multi-gene Constructs using Modular Golden Gate Cloning. Journal of Visualized Experiments, 2021; 168: e61993; DOI 10.3791/61993 (Link)
  • Ravi Gopal, B., Guardian, M.G., Dickman, R., Wang, Z.Q.*, High-resolution Tandem Mass Spectrometry Dataset Reveals Fragmentation Patterns of Cardiac Glycosides in Leaves of the Foxglove Plants. Data in Brief, 2020; 30: 105464; DOI 10.1016/j.dib.2020.105464 (Link)
  • Ravi Gopal, B., Guardian, M.G., Dickman, R., Wang, Z.Q.*, Profiling and Structural Analysis of Cardiac Glycosides in Two Species of Digitalis using High-Resolution Tandem Mass Spectrometry. Journal of Chromatography A, 2020; 1618: 460903; DOI 10.1016/j.chroma.2020.460903 (Link)
  • Wang, Z., Benning, C. Specific Detection and Quantification of Phosphatidic Acid Using the Arabidopsis TGD4 Protein. 2014 US Patent 8,629,251 B2 (Link)
  • Wang, Z., Anderson, N.S., Benning, C. The Phosphatidic Acid Binding Site of the Arabidopsis TGD4 Protein Required for Lipid Import into Chloroplasts Journal of Biological Chemistry 2013; 228(7); 4763-4771  Download
  • Wang, Z., Benning, C. Chloroplast Lipid Synthesis and Lipid Trafficking Through ER-to-Plastid Membrane Contact Sites. Biochemistry Society Transactions 2012; 40(2): 457-63 Download
  • Wang, Z., Xu, C., Benning, C. TGD4 Involved in ER-to-Chloroplast Lipid Trafficking   is a Phosphatidic Acid Binding Protein. The Plant Journal 2012; 70(4): 614-623 Download
  • Wang, Z., Benning, C. Arabidopsis thaliana Polar Glycerolipid Profiling by Thin Layer Chromatography (TLC) Coupled with Gas-Liquid Chromatography (GLC) Journal of Visualized Experiments 2011; e2518 Download
  • Roston, R., Moellering E.R., Gao, J, Wang, Z., Muthan, B., Benning, C. Membrane Lipid Metabolism and Trafficking during Chloroplast Development and Maintenance Chemistry and Physics of Lipids 2010; 163; S16 Download